Function reference • SLAM

All functions
`Aggregate_Data()`	Aggregate Case Study Data
`Assess()`	Conduct an Assessment
`calculate_optimal_fishing()`	Calculate the optimal pattern in fishing mortality
`calc_average_monthly_F()` `calc_average_monthly_SPR()` `Calc_RP()` `plot_RP()`	Calculate SPR and F reference points from HARA model
`Check()`	Check a `Data` object
`Check_Parameters()`	Check Parameters
`Example_Data()`	Print the file path for example data sets included in SLAM
`File_Location()`	Get the file path of the system files for the SLAM package
`Generate_Data()`	Generate Sampled Data from a Simulated Fishery
`Generate_Monthly_Recruitment()`	Generate Seasonal Recruitment Pattern
`Import()`	Import and organize data for assessment model
`Import(<Simulated>)`	Import Simulated Data
`Import_Parameters()` `Import_LifeHistory()` `Import_Exploitation()` `Import_Sampling()`	Import the Life History, Exploitation, and Sampling Parameters
`Initialize_Parameters()`	Initialize Parameters for SLAM Estimation
`LifeHistory`	Example Life History Parameters
`Make_Data()` `Make()`	Construct an empty `Data` object
`New_Parameters()`	Create new Parameters list
`plot_at_Age()` `plot_weight_at_age()` `plot_maturity_at_age()` `plot_M_at_age()` `plot_PSM_at_age()`	Plot the at-age schedules
`plot_CAW()`	Plot the weight composition data, and model fits to the data
`plot_F()`	Plot the predicted fishing mortality (F)
`plot_Indices()` `plot_Biomass()` `plot_Effort()` `plot_Catch()`	Plot indices of relative biomass, effort, and catch
`plot_seasonal_rec()` `get_seasonal_recruitment()`	Plot the predicted seasonal recruitment pattern
`plot_selectivity()`	Plot the predicted selectivity-at-age schedule
`plot_SPR()`	Plot the predicted spawning potential ratio (SPR)
`Process_Data()`	Process Case Study Data
`Report()`	Generate Data and Assessment Reports
`report_NLL()`	Report the negative log-likelihoods
`Simulate()`	Simulate the fishery dynamics for a short-lived semelparous species
`Sim_Test()`	Run a Simulation Test
`Summarize_Data()`	Summarize Case Study Data

Reference

All functions